PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_BF6C4095F.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 361aa    MW: 40723.3 Da    PI: 8.638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_BF6C4095F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17331151498
                            T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            ++ ++p kfa+++  ++++ e+ +l+l+ +sg++W v +  +k  ++ +l++GW +F+ka++L+e+D ++F+ +g+ +f   v +f+
  Traes_5DS_BF6C4095F.2  33 AITRIPDKFASSFirQMQTSEGLDLKLKAPSGETWHVGV--SKVANELFLRSGWGGFAKAHELQENDLLLFTCTGNASF--EVLIFD 115
                            5678******999**8899999*****************..*******************************9888777..888887 PP

2B356.64.8e-18247341599
                            -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
                     B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                            l+++   k++ l++p kfa++h ++k ++  ++ l   ++  +W v++ y  ++ r++  + W +Fv++ngL+egD++vF+l+ g  +
  Traes_5DS_BF6C4095F.2 247 LMTHLQRKNNFLTIPSKFAADHlQSK-PR--EVLLLRlSREDKWHVRC-YYSSRTRCFNCQRWVKFVRDNGLREGDVCVFELIkGArK 330
                            55666678899***********5444.33..4555553788*******.6666667777889*******************9965567 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                             ++++v+v r+
  Traes_5DS_BF6C4095F.2 331 MTTMTVHVARR 341
                            78888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.8E-727117IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-1834121IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-1535115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-1835119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-1636115No hitNo description
PROSITE profilePS5086312.71737117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-22234342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-21235341IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-18240340No hitNo description
SMARTSM010193.3E-13242344IPR003340B3 DNA binding domain
PROSITE profilePS5086314.085243342IPR003340B3 DNA binding domain
PfamPF023621.4E-16247341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLDGLDDMDG VEDVRFDELI GMQGVVFHLV GNAITRIPDK FASSFIRQMQ TSEGLDLKLK  60
APSGETWHVG VSKVANELFL RSGWGGFAKA HELQENDLLL FTCTGNASFE VLIFDPSGCE  120
KLSPLFAGRM RKHFDNMVGQ GGVEQYPDSD DTRVPSQFVG SPQKASTSRK CSGKTKSSKE  180
LPESPSSTSC HVKLEATEEQ KSDDDTCTEP GYYSSRTASQ LNEDEKQEIM ERASIRPGNP  240
AFVVVLLMTH LQRKNNFLTI PSKFAADHLQ SKPREVLLLR LSREDKWHVR CYYSSRTRCF  300
NCQRWVKFVR DNGLREGDVC VFELIKGARK MTTMTVHVAR RKKDGRFVAG QWAARGRRLR  360
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-33HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758594.11e-116PREDICTED: B3 domain-containing protein LOC_Os12g40090-like
SwissprotQ2QMT51e-103Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLA0A096UTJ40.0A0A096UTJ4_WHEAT; Uncharacterized protein
STRINGMLOC_23884.11e-121(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-26B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]